Prevalence of pathogenic variants of inborn errors of immunity in critically ill children admitted to the pediatric intensive care unit for sepsis: A Moroccan cohort study
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Abstract
Introduction: Pediatric sepsis remains a leading cause of morbidity and mortality in Africa. Nearly half of pediatric sepsis deaths occur in previously healthy children. The role of inborn errors of immunity (IEI) in susceptibility to sepsis is yet to be identified and their prevalence amongst previously healthy children admitted to the pediatric intensive care unit (PICU) is unclear. We aimed to assess prevalence of IEI among a cohort of children admitted to the PICU for community acquired sepsis and to describe demographic, microbiological, and genetic features of this cohort.
Methods: We listed a cohort of children admitted to our PICU for sepsis from January 2021 to March 2023. Demographic data was collected, and microbiological tests were performed. Written consent was obtained and whole exome sequencing (WES) was performed after DNA extraction.
Results: Thirty cases were included. Mean age at admission was 46 months (1-180), microorganisms were identified in 20 cases (66%). Bacterial sepsis was identified in 8 cases, viral sepsis in 6 cases and fungal sepsis in 2 cases. Mean pediatric sequential sepsis related organ failure assessment (pSOFA) score at admission was 6,46 (2-18). Mechanical ventilation was necessary in 18 cases. Inotropes were used in 17 cases and renal replacement therapy initiated in 3 cases. Pathogenic variants of IEI were identified in 5 out of 30 cases (17%). These variants were identified in the following genes BACH2, TLR7, TINF2, NFK2B and MAGT1. Overall mortality was 50% and mean intensive care unit (ICU) stay ....(abstract truncated at 250 words)
Keywords:
Sepsis, inborn errors of , whole exome sequencing, pSOFA, children##plugins.themes.academic_pro.article.details##
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References
- Schlapbach LJ, Watson RS, Sorce LR, Argent AC, Menon K, Hall MW, et al. International Consensus Criteria for Pediatric Sepsis and Septic Shock. JAMA. 2024 Feb 27;331(8):665–74.
- Rudd KE, Johnson SC, Agesa KM, Shackelford KA, Tsoi D, Kievlan DR, et al. Global, regional, and national sepsis incidence and mortality, 1990–2017: analysis for the Global Burden of Disease Study. Lancet Lond Engl. 2020 Jan 18;395(10219):200–11.
- Tangye SG, Al-Herz W, Bousfiha A, Chatila T, Cunningham-Rundles C, Etzioni A, et al. Human Inborn Errors of Immunity: 2019 Update on the Classification from the International Union of Immunological Societies Expert Committee. J Clin Immunol. 2020 Jan;40(1):24–64.
- Aranda CS, Guimarães RR, de Gouveia-Pereira Pimentel M. Combined immunodeficiencies. J Pediatr (Rio J). 2020 Dec 17;97(Suppl 1):S39–48.
- Notarangelo LD, Bacchetta R, Casanova JL, Su HC. Human Inborn Errors of Immunity: an Expanding Universe. Sci Immunol. 2020 Jul 10;5(49):eabb1662.
- Damla Demir D, Asnaashari K, Rezaei N, Özen A. Management of Inborn Errors of Immunity in the Genomic Era. Turk Arch Pediatr. 2022 Mar 1;57(2):132–45.
- Valencia CA, Husami A, Holle J, Johnson JA, Qian Y, Mathur A, et al. Clinical Impact and Cost-Effectiveness of Whole Exome Sequencing as a Diagnostic Tool: A Pediatric Center’s Experience. Front Pediatr. 2015 Aug 3;3:67.
- Aissaoui O, El-Bouz M, Bousfiha AA, Gueddari W, Chlilek A. [Pediatric sepsis: towards a rapid transfer to the Pediatric Intensive Care Unit (PICU)]. Pan Afr Med J. 2021;39:189.
- McLaren W, Gil L, Hunt SE, Riat HS, Ritchie GRS, Thormann A, et al. The Ensembl Variant Effect Predictor. Genome Biol. 2016 Jun 6;17(1):122.
- ClinVar [Internet]. [cited 2024 Aug 28]. Available from: https://www.ncbi.nlm.nih.gov/clinvar/
- Zhang P, Bigio B, Rapaport F, Zhang SY, Casanova JL, Abel L, et al. PopViz: a webserver for visualizing minor allele frequencies and damage prediction scores of human genetic variations. Bioinformatics. 2018 Dec 15;34(24):4307–9.
- Tangye SG, Al-Herz W, Bousfiha A, Cunningham-Rundles C, Franco JL, Holland SM, et al. The Ever-Increasing Array of Novel Inborn Errors of Immunity: an Interim Update by the IUIS Committee. J Clin Immunol. 2021;41(3):666–79.
- Yu JE. New primary immunodeficiencies 2023 update. Curr Opin Pediatr. 2024 Feb 1;36(1):112–23.
- Puck JM. Population-based newborn screening for severe combined immunodeficiency: Steps toward implementation. J Allergy Clin Immunol. 2007 Oct 1;120(4):760–8.
- Stearns-Kurosawa D, Osuchowski M, Valentine C, Kurosawa S, Remick D. The Pathogenesis of Sepsis. Annu Rev Pathol. 2010 Nov 30;6:19–48.
- Borghesi A, Trück J, Asgari S, Sancho-Shimizu V, Agyeman PKA, Bellos E, et al. Whole-exome Sequencing for the Identification of Rare Variants in Primary Immunodeficiency Genes in Children With Sepsis: A Prospective, Population-based Cohort Study. Clin Infect Dis Off Publ Infect Dis Soc Am. 2020 Dec 17;71(10):e614–23.
- Kernan KF, Ghaloul-Gonzalez L, Vockley J, Lamb J, Hollingshead D, Chandran U, et al. Prevalence of Pathogenic and Potentially Pathogenic Inborn Error of Immunity Associated Variants in Children with Severe Sepsis. J Clin Immunol. 2022 Feb;42(2):350–64.
- De Leo P, Gazzurelli L, Baronio M, Montin D, Di Cesare S, Giancotta C, et al. NFKB2 regulates human Tfh and Tfr pool formation and germinal center potential. Clin Immunol. 2020 Jan 1;210:108309.
- Yazdani R, Habibi S, Sharifi L, Azizi G, Abolhassani H, Olbrich P, et al. Common Variable Immunodeficiency: Epidemiology, Pathogenesis, Clinical Manifestations, Diagnosis, Classification, and Management. J Investig Allergol Clin Immunol. 2020;30(1):14–34.
- Trapani V, Shomer N, Rajcan-Separovic E. The role of MAGT1 in genetic syndromes. Magnes Res. 2015 Jun;28(2):46–55.
- Li FY, Chaigne-Delalande B, Rao VK, Zhang Y, Matthews H, Kuijpers T (TW), et al. Clinical utility gene card for: X-linked immunodeficiency with magnesium defect, Epstein–Barr virus infection, and neoplasia (XMEN). Eur J Hum Genet. 2015 Jun;23(6):889.
- Yang L, Chen S, Zhao Q, Sun Y, Nie H. The Critical Role of Bach2 in Shaping the Balance between CD4+ T Cell Subsets in Immune-Mediated Diseases. Mediators Inflamm. 2019 Dec 30;2019:2609737.
- Zhou L, Sun G, Chen R, Chen J, Fang S, Xu Q, et al. An early-onset SLE patient with a novel paternal inherited BACH2 mutation. J Clin Immunol. 2023 Aug;43(6):1367–78.
- Afzali B, Grönholm J, Vandrovcova J, O’Brien C, Sun HW, Vanderleyden I, et al. BACH2 immunodeficiency illustrates an association between super-enhancers and haploinsufficiency. Nat Immunol. 2017 Jul;18(7):813–23.
- Jensen MR, Jelsig AM, Gerdes AM, Hölmich LR, Kainu KH, Lorentzen HF, et al. TINF2 is a major susceptibility gene in Danish patients with multiple primary melanoma. Hum Genet Genomics Adv. 2023 Jul 23;4(4):100225.
- Savage SA, Niewisch MR. Dyskeratosis Congenita and Related Telomere Biology Disorders. In: Adam MP, Feldman J, Mirzaa GM, Pagon RA, Wallace SE, Bean LJ, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993 [cited 2024 Jul 2]. Available from: http://www.ncbi.nlm.nih.gov/books/NBK22301/
- Du HY, Mason PJ, Bessler M, Wilson DB. TINF2 Mutations in Children With Severe Aplastic Anemia. Pediatr Blood Cancer. 2009 May;52(5):687.
- Schmutz I, Mensenkamp AR, Takai KK, Haadsma M, Spruijt L, de Voer RM, et al. TINF2 is a haploinsufficient tumor suppressor that limits telomere length. eLife. 2020 Dec 1;9:e61235.
- He Y, Zhang X, Sun Y, Gong P, Yu H. Promotion properties of TLR7 in pediatric meningitis via the NF-κB pathway. J Bioenerg Biomembr. 2021 Feb 1;53(1):39–48.